| Level | Mode | Type |
|---|---|---|
| Gotham Sewers (1-1) | Story | Batman |
| Gotham Sewers (1-1) | Free Play | The Joker |
| Killer Croc (1-3) | Free Play | The Joker |
| The Bat Observatory (2-1) | Free Play | Batman |
| The Bat Observatory (2-1) | Free Play | The Joker |
| The Batcave (2-2) | Free Play | The Joker |
| The Bat Monster (2-3) | Story | Batman |
| The Bat Monster (2-3) | Story | The Joker |
| The Bat-rocket Hangar (3-1) | Story | The Joker |
| Watchtower Battle (3-2) | Story | The Joker |
| Watchtower Access (3-3) | Story | The Joker |
| The Control Room (4-1) | Story | The Joker |
| The Armory (4-2) | Story | The Joker |
| The Containment Facility (4-3) | Story | The Joker |
| Superman in Space (5-1) | Story | The Joker |
| The Weapons Lab (5-2) | Free Play | Lex Luthor |
| The Docking Bay (5-3) | Story | The Joker |
| Brainiac’s Ship (6-1) | Story | The Joker |
| Brainiac Battle (6-2) | Free Play | The Joker |
| Super Skydive (6-3) | Story | The Joker |
| LEGO Paris (7-1) | Story | Lex Luthor |
| LEGO London (7-2) | Story | Lex Luthor |
| LEGO Pisa (7-3) | Story | The Joker |
| Ace Chemicals (8-1) | Story | Lex Luthor |
| The Fun House (8-2) | Free Play | The Joker |
| Wayne Tower (8-3) | Story | Batman |
| The Zamarons (9-1) | Story | Batman |
| Zamaron Encounter (9-2) | Story | The Joker |
| Predator (9-3) | Story | Lex Luthor |
| The Reach (10-1) | Story | The Joker |
| Odym Jungle (10-2) | Story | Lex Luthor |
| Saint Walker (10-3) | Free Play | Batman |
| Nok Approach (11-1) | Story | The Joker |
| The Underground Caverns (11-2) | Free Play | Batman |
| The Indigo Power Battery (11-3) | Story | Lex Luthor |
| Rivers of Jam (12-1) | Story | Batman |
| The Butcher (12-3) | Story | The Joker |
| The Breach of Okaara (13-1) | Story | The Joker |
| Larfleeze’s Vault (13-2) | Story | Lex Luthor |
| Larfleeze Attack (13-3) | Story | Batman |
| The Mines of Qward (14-1) | Story | Lex Luthor |
| Sinestro’s Surprise (14-2) | Free Play | Batman |
| Sinestro Showdown (14-3) | Story | The Joker |
| The Fortress of Solitude (15-1) | Story | Batman |
| Atrocitus Attack (15-2) | Story | The Joker |
| Brainiac’s Final Stand (15-3) | Story | Lex Luthor |
Lego Batman 3: Beyond Gotham eGuide Checklists (Handheld)